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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
60
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
60
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
25
histone
25
histone modification
23
control
17
transcription factor
16
broad histone mark
9
narrow histone mark
RNA binding protein
Date released
386
February, 2021
49
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
437
bam
420
bigWig
401
tsv
39
fastq
8
bed narrowPeak
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
477
Homo sapiens
Biosample type
475
tissue
2
primary cell
1
in vitro differentiated cells
Organ
732
pancreas
651
connective tissue
647
liver
478
adipose tissue
376
heart
353
epithelium
304
kidney
225
vasculature
220
blood vessel
165
brain
158
bone element
134
artery
122
limb
81
musculature of body
60
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
420
hg19
419
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
RNA binding protein
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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