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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
69
ChIP-seq
6
ATAC-seq
6
WGBS
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
69
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
53
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
399
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
481
Homo sapiens
Biosample type
482
tissue
2
primary cell
1
in vitro differentiated cells
Organ
541
connective tissue
482
adipose tissue
478
pancreas
355
liver
246
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
482
AMP
Genome assembly (visualization)
418
hg19
416
GRCh38
Lab
482
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
482 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
8
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
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