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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
WGBS
3
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
36
DNA binding
4
DNA methylation
3
DNA accessibility
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
October, 2019
Available data
bam
44
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
45
Homo sapiens
Biosample type
45
tissue
1
in vitro differentiated cells
Organ
190
pancreas
152
epithelium
97
kidney
89
bone element
84
connective tissue
79
liver
46
adipose tissue
46
heart
42
vasculature
41
blood vessel
36
musculature of body
35
artery
35
eye
31
brain
11
lung
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
4
hg19
Lab
46
AMP-T2D consortium
files.file_type!
bam
assay_slims!
Transcription
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
subcutaneous adipose tissue
1
in vitro differentiated cells
white fat cell
1
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