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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
31
ATAC-seq
22
total RNA-seq
6
pCHi-C
4
WGBS
1
RNA microarray
1
RRBS
Assay category
38
DNA binding
31
DNA accessibility
22
Transcription
5
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
5
control
Date released
40
August, 2017
32
February, 2023
22
October, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
July, 2019
1
March, 2020
1
May, 2023
Available data
bam
431
bigWig
406
tsv
46
bed narrowPeak
44
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
102
Homo sapiens
Biosample type
101
tissue
1
in vitro differentiated cells
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
33
hg19
1
GRCh38
Lab
103
AMP-T2D consortium
files.file_type!
bam
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
2
adipose tissue
3
1
1
1
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in vitro differentiated cells
white fat cell
1
primary cell
retinal pigment epithelial cell
1
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