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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
38
ATAC-seq
37
ChIP-seq
6
WGBS
6
total RNA-seq
5
pCHi-C
3
Hi-C
2
RRBS
1
RNA microarray
Assay category
99
Transcription
38
DNA accessibility
37
DNA binding
8
DNA methylation
3
3D chromatin structure
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
5
control
Date released
93
August, 2021
40
August, 2017
37
February, 2023
6
March, 2020
5
February, 2020
4
July, 2019
2
October, 2019
1
April, 2019
1
August, 2018
1
January, 2018
1
May, 2023
Available data
bam
609
bigWig
569
tsv
164
bed narrowPeak
104
bigBed narrowPeak
44
fastq
36
bed bed3+
33
bed broadPeak
32
bigBed broadPeak
14
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
bedpe bed3+
3
hic
Organism
190
Homo sapiens
Biosample type
189
tissue
1
in vitro differentiated cells
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
191
AMP
Genome assembly (visualization)
36
GRCh38
11
hg19
Lab
191
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
191 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
coronary artery
35
1
heart left ventricle
18
1
2
1
1
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
+ See 14 more…
in vitro differentiated cells
white fat cell
1
primary cell
cardiac fibroblast
1
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