Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
15
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
15
DNA binding
4
DNA accessibility
2
DNA methylation
Target of assay
13
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
13
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
419
Homo sapiens
Biosample type
417
tissue
2
primary cell
Organ
611
liver
596
pancreas
551
connective tissue
419
adipose tissue
280
epithelium
187
brain
154
heart
142
vasculature
139
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
53
kidney
35
musculature of body
29
nerve
27
embryo
15
spleen
13
vein
2
eye
1
pericardium
1
pituitary gland
Project
419
AMP
Genome assembly (visualization)
417
hg19
416
GRCh38
Lab
419
AMP-T2D consortium
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
419 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
2
subcutaneous adipose tissue
6
2
1
1
omental fat pad
4
3
1
1
white adipose tissue
8
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
See all biosamples
Download