Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
447
total RNA-seq
96
ChIP-seq
81
ATAC-seq
64
single cell RNA-seq
6
WGBS
6
snATAC-seq
3
RNA microarray
3
small RNA-seq
3
snDrop-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
514
Transcription
96
DNA binding
88
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
52
histone
52
histone modification
30
broad histone mark
30
control
22
narrow histone mark
14
transcription factor
6
RNA binding protein
Date released
394
February, 2021
129
August, 2021
53
August, 2017
47
September, 2023
23
April, 2019
23
October, 2018
15
May, 2023
14
July, 2019
5
October, 2019
3
December, 2019
2
February, 2020
1
February, 2023
1
January, 2018
1
March, 2020
1
November, 2019
1
October, 2017
Available data
538
bam
514
bigWig
411
tsv
166
bed narrowPeak
97
bigBed narrowPeak
bed bed3+
71
bed broadPeak
70
bigBed broadPeak
64
xls
62
txt
43
fastq
8
tagAlign
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
hic
Organism
712
Homo sapiens
Biosample type
713
tissue
28
primary cell
19
cell line
1
in vitro differentiated cells
Organ
541
connective tissue
482
adipose tissue
478
pancreas
355
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
666
AMP
47
KPMP
Genome assembly (visualization)
513
GRCh38
443
hg19
Lab
524
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
audit script error
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
713 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
RNA microarray
small RNA-seq
snDrop-seq
FAIRE-seq
Hi-C
RRBS
pCHi-C
tissue
adipose tissue
382
2
3
3
1
kidney
49
27
75
64
6
1
1
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
+ See 9 more…
See all biosamples
Download