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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
6
ATAC-seq
4
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
DNA binding
8
DNA accessibility
4
DNA methylation
Date released
386
February, 2021
12
July, 2019
5
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
406
bigWig
405
bam
401
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
415
Homo sapiens
Biosample type
413
tissue
2
primary cell
1
in vitro differentiated cells
Organ
722
pancreas
528
connective tissue
416
adipose tissue
389
epithelium
298
kidney
251
heart
236
liver
159
bone element
132
vasculature
130
blood vessel
107
artery
66
brain
55
eye
55
limb
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
416
AMP
Genome assembly (visualization)
407
hg19
404
GRCh38
Lab
416
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
416 results
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total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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