Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
4
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
73
DNA binding
8
DNA accessibility
4
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
55
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
44
bam
44
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
87
Homo sapiens
Biosample type
87
tissue
1
in vitro differentiated cells
Organ
595
liver
461
pancreas
317
epithelium
260
brain
225
kidney
200
connective tissue
179
heart
167
vasculature
162
blood vessel
114
limb
97
bone element
88
adipose tissue
83
artery
83
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed bedMethyl
assay_slims!
Transcription
BIOSAMPLE
ASSAY
88 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
1
1
+ See 1 more…
in vitro differentiated cells
white fat cell
1
See all biosamples
Download