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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
7
ATAC-seq
4
DNase-seq
4
WGBS
2
pCHi-C
1
RNA microarray
Assay category
Transcription
108
DNA binding
11
DNA accessibility
4
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
35
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
55
August, 2017
39
October, 2019
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
82
bam
54
bigWig
44
fastq
40
bed narrowPeak
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
tsv
Organism
125
Homo sapiens
Biosample type
125
tissue
1
in vitro differentiated cells
Organ
595
liver
461
pancreas
317
epithelium
260
brain
225
kidney
219
heart
200
connective tissue
167
vasculature
162
blood vessel
114
limb
97
bone element
88
adipose tissue
83
artery
83
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
126
AMP
Genome assembly (visualization)
54
hg19
50
GRCh38
Lab
126
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed bedMethyl
assay_slims!
Transcription
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
tibial nerve
35
1
2
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
white fat cell
1
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