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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
66
ChIP-seq
6
WGBS
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
66
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
386
February, 2021
54
August, 2017
18
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
430
bam
413
bigWig
389
tsv
44
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
465
Homo sapiens
Biosample type
465
tissue
1
in vitro differentiated cells
Organ
726
pancreas
591
connective tissue
466
adipose tissue
360
epithelium
340
liver
181
heart
161
kidney
151
bone element
93
vasculature
92
blood vessel
66
brain
65
artery
27
eye
26
musculature of body
25
limb
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
466
AMP
Genome assembly (visualization)
401
GRCh38
401
hg19
Lab
466
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
466 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
3
10
1
white adipose tissue
12
omental fat pad
1
8
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in vitro differentiated cells
white fat cell
1
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