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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
84
ChIP-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
408
Transcription
84
DNA binding
7
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
41
control
31
histone
31
histone modification
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
54
August, 2017
22
October, 2019
18
October, 2018
17
July, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2019
1
May, 2023
Available data
556
bam
516
bigWig
408
tsv
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
507
Homo sapiens
Biosample type
505
tissue
2
primary cell
1
in vitro differentiated cells
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
508
AMP
Genome assembly (visualization)
418
GRCh38
417
hg19
Lab
508
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
508 results
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total RNA-seq
ChIP-seq
WGBS
Hi-C
small RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
tibial nerve
5
11
omental fat pad
5
8
1
+ See 6 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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