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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
67
ChIP-seq
6
WGBS
4
ATAC-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
67
DNA binding
6
DNA methylation
4
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
440
bam
423
bigWig
399
tsv
43
fastq
13
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
477
Homo sapiens
Biosample type
478
tissue
2
primary cell
1
in vitro differentiated cells
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
212
kidney
185
heart
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
414
hg19
413
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
white adipose tissue
12
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