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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
30
ATAC-seq
22
total RNA-seq
6
pCHi-C
4
WGBS
1
RNA microarray
1
RRBS
Assay category
57
DNA binding
30
DNA accessibility
22
Transcription
5
DNA methylation
Target of assay
32
histone
32
histone modification
25
control
20
broad histone mark
12
narrow histone mark
Date released
40
August, 2017
32
February, 2023
21
October, 2019
18
October, 2018
3
February, 2020
1
August, 2018
1
August, 2021
1
July, 2019
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
Available data
449
bam
bigWig
406
tsv
46
bed narrowPeak
44
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
120
Homo sapiens
Biosample type
118
tissue
2
primary cell
1
in vitro differentiated cells
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
31
hg19
2
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
35
3
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
2
subcutaneous adipose tissue
10
1
1
+ See 3 more…
primary cell
retinal pigment epithelial cell
1
1
in vitro differentiated cells
white fat cell
1
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