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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
4
WGBS
4
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
65
DNA binding
4
DNA methylation
4
Transcription
2
DNA accessibility
Target of assay
35
control
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
11
October, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
484
bam
bigWig
406
tsv
44
fastq
40
bed narrowPeak
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
77
Homo sapiens
Biosample type
77
tissue
1
in vitro differentiated cells
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
tibial nerve
11
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
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in vitro differentiated cells
white fat cell
1
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