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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
5
DNA accessibility
3
DNA methylation
Date released
386
February, 2021
12
July, 2019
3
August, 2017
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
406
bigWig
405
bam
401
tsv
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
410
Homo sapiens
Biosample type
409
tissue
2
primary cell
Organ
520
connective tissue
411
adipose tissue
404
pancreas
302
kidney
259
heart
226
liver
210
epithelium
159
bone element
134
vasculature
131
blood vessel
107
artery
65
brain
56
eye
56
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
411
AMP
Genome assembly (visualization)
404
hg19
401
GRCh38
Lab
411
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
411 results
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total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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