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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
3
WGBS
2
total RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
35
DNA binding
3
DNA methylation
2
Transcription
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
5
control
Date released
38
August, 2017
2
February, 2020
1
August, 2021
1
March, 2020
Available data
fastq
21
bam
7
tagAlign
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
1
bedpe bed3+
Organism
41
Homo sapiens
Biosample type
42
tissue
Organ
225
kidney
205
heart
180
pancreas
129
epithelium
118
brain
91
liver
89
bone element
71
blood vessel
71
vasculature
67
connective tissue
48
artery
42
adipose tissue
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
hg19
401
GRCh38
Lab
42
AMP-T2D consortium
files.file_type!
fastq
assembly!
hg19
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
WGBS
total RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
1
1
adipose tissue
1
omental fat pad
1
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