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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
25
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
25
DNA binding
5
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
narrow histone mark
5
control
Date released
386
February, 2021
28
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
441
bam
423
bigWig
401
tsv
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
435
Homo sapiens
Biosample type
434
tissue
2
primary cell
Organ
563
connective tissue
450
pancreas
436
adipose tissue
353
heart
339
kidney
285
liver
246
epithelium
206
vasculature
203
blood vessel
159
bone element
152
brain
135
artery
107
limb
81
musculature of body
58
eye
35
nerve
20
lung
18
ureter
16
skeleton
16
vein
10
embryo
9
blood
9
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
436
AMP
Genome assembly (visualization)
404
hg19
401
GRCh38
Lab
436
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
436 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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