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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
12
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
65
DNA binding
15
Transcription
8
DNA accessibility
6
DNA methylation
Target of assay
25
histone
25
histone modification
23
control
17
transcription factor
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
Date released
February, 2021
49
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
56
bam
44
fastq
39
bigWig
15
tsv
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
96
Homo sapiens
Biosample type
94
tissue
2
primary cell
1
in vitro differentiated cells
Organ
895
pancreas
702
liver
485
epithelium
346
kidney
287
heart
207
connective tissue
170
vasculature
168
brain
164
blood vessel
116
limb
97
adipose tissue
81
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
39
hg19
38
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tagAlign
month_released!
February, 2021
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
28
3
omental fat pad
11
5
1
1
2
subcutaneous adipose tissue
12
5
1
1
1
white adipose tissue
12
adipose tissue
2
1
3
3
1
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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