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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
4
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
73
DNA binding
8
DNA accessibility
4
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
55
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
87
Homo sapiens
Biosample type
87
tissue
1
in vitro differentiated cells
Organ
614
liver
523
pancreas
362
epithelium
326
kidney
258
brain
203
connective tissue
177
heart
166
vasculature
161
blood vessel
114
limb
101
bone element
88
adipose tissue
83
artery
83
musculature of body
69
blood
69
bodily fluid
55
eye
38
nerve
23
embryo
22
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
88
AMP
Genome assembly (visualization)
28
hg19
24
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
bed bedMethyl
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
1
1
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in vitro differentiated cells
white fat cell
1
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