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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
6
WGBS
4
ATAC-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
67
DNA binding
6
DNA methylation
4
DNA accessibility
1
Transcription
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
55
August, 2017
18
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
Available data
442
bam
425
bigWig
tsv
44
fastq
13
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
79
Homo sapiens
Biosample type
79
tissue
1
in vitro differentiated cells
Organ
438
pancreas
292
epithelium
259
liver
226
kidney
178
connective tissue
133
brain
101
bone element
91
heart
85
vasculature
83
blood vessel
80
adipose tissue
58
artery
50
eye
40
musculature of body
31
limb
23
embryo
19
lung
16
skeleton
15
blood
15
bodily fluid
12
nerve
11
spleen
9
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
80
AMP
Genome assembly (visualization)
18
hg19
17
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
bigBed narrowPeak
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
WGBS
ATAC-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
10
1
omental fat pad
8
1
adipose tissue
1
3
2
1
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in vitro differentiated cells
white fat cell
1
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