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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
51
ATAC-seq
6
DNase-seq
6
WGBS
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
107
DNA binding
57
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
52
histone
52
histone modification
34
broad histone mark
33
control
22
transcription factor
18
narrow histone mark
6
RNA binding protein
Date released
57
August, 2017
36
February, 2023
27
October, 2019
23
October, 2018
14
February, 2021
5
May, 2019
3
June, 2019
1
August, 2018
1
August, 2021
1
January, 2018
1
July, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
544
bam
510
bigWig
tsv
87
bed narrowPeak
44
fastq
35
bigBed narrowPeak
14
tagAlign
10
bed bed3+
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
172
Homo sapiens
Biosample type
158
tissue
14
cell line
1
in vitro differentiated cells
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
173
AMP
Genome assembly (visualization)
100
GRCh38
67
hg19
Lab
173
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
RNA microarray
pCHi-C
total RNA-seq
tissue
coronary artery
5
36
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
23
1
2
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
8
in vitro differentiated cells
white fat cell
1
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