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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
3
small RNA-seq
2
DNase-seq
1
ChIP-seq
1
pCHi-C
Assay category
400
Transcription
2
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
12
July, 2019
2
February, 2020
1
August, 2017
1
June, 2019
1
March, 2020
1
November, 2018
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
404
Homo sapiens
Biosample type
402
tissue
2
primary cell
Organ
488
connective tissue
438
pancreas
404
adipose tissue
237
liver
198
heart
178
epithelium
102
kidney
85
vasculature
81
blood vessel
73
brain
62
artery
58
bone element
musculature of body
43
limb
18
ureter
14
embryo
9
eye
7
nerve
4
vein
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
404
AMP
Genome assembly (visualization)
401
hg19
400
GRCh38
Lab
404
AMP-T2D consortium
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
404 results
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total RNA-seq
small RNA-seq
DNase-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
1
omental fat pad
5
1
2
subcutaneous adipose tissue
7
1
visceral abdominal adipose tissue
3
subcutaneous abdominal adipose tissue
1
primary cell
mesenchymal stem cell of adipose
1
1
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