Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
729
total RNA-seq
74
single cell RNA-seq
6
WGBS
5
small RNA-seq
2
ATAC-seq
2
pCHi-C
Assay category
808
Transcription
6
DNA methylation
2
DNA accessibility
Date released
418
February, 2021
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
26
September, 2018
20
November, 2019
16
July, 2019
7
March, 2020
3
August, 2018
3
February, 2020
2
October, 2018
1
August, 2021
1
June, 2018
Available data
1131
bam
1048
bigWig
818
tsv
515
fastq
227
bed narrowPeak
101
bigBed narrowPeak
80
zippedFastqFolder
35
bed bed3+
27
tagAlign
24
bed broadPeak
9
bigBed broadPeak
8
bed bedMethyl
8
bedpe bed3+
8
bigBed bedMethyl
7
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
818
Homo sapiens
Biosample type
674
tissue
110
primary cell
34
cell line
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
810
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
806
hg19
804
GRCh38
Lab
811
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
BIOSAMPLE
ASSAY
818 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
tissue
adipose tissue
381
1
islet of Langerhans
267
1
subcutaneous adipose tissue
7
1
omental fat pad
5
1
body of pancreas
3
2
+ See 2 more…
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 5 more…
cell line
EndoC_BH1
33
1
See all biosamples
Download