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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
23
DNA binding
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
421
bam
403
bigWig
401
tsv
24
fastq
5
bed narrowPeak
5
bigBed narrowPeak
1
bedpe bed3+
Organism
426
Homo sapiens
Biosample type
424
tissue
2
primary cell
1
in vitro differentiated cells
Organ
710
liver
590
pancreas
527
connective tissue
427
adipose tissue
375
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
60
blood
60
bodily fluid
40
nerve
37
embryo
35
musculature of body
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
427
AMP
Genome assembly (visualization)
404
GRCh38
404
hg19
Lab
427
AMP-T2D consortium
month_released!
August, 2017
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
427 results
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total RNA-seq
ChIP-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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