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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
Assay category
401
Transcription
7
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
406
bigWig
404
bam
401
tsv
7
fastq
5
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
416
Homo sapiens
Biosample type
413
tissue
2
primary cell
1
in vitro differentiated cells
Organ
660
pancreas
518
connective tissue
416
adipose tissue
329
epithelium
225
liver
165
heart
165
kidney
127
vasculature
125
blood vessel
105
artery
75
bone element
67
brain
56
eye
56
musculature of body
55
limb
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
nerve
5
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
416
AMP
Genome assembly (visualization)
406
hg19
405
GRCh38
Lab
416
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
August, 2021
audit.ERROR.category!
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
416 results
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total RNA-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
382
3
3
1
omental fat pad
5
1
1
2
subcutaneous adipose tissue
7
1
1
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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