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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
399
Transcription
73
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
438
bam
421
bigWig
399
tsv
42
fastq
11
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
485
Homo sapiens
Biosample type
485
tissue
2
primary cell
1
in vitro differentiated cells
Organ
544
connective tissue
496
pancreas
485
adipose tissue
357
liver
238
brain
194
heart
158
bone element
122
blood vessel
122
vasculature
103
kidney
86
limb
67
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
485
AMP
Genome assembly (visualization)
422
hg19
420
GRCh38
Lab
485
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
August, 2021
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
485 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
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