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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
73
DNA binding
8
DNA accessibility
6
DNA methylation
2
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
2
July, 2019
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
46
bam
43
fastq
29
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
90
Homo sapiens
Biosample type
90
tissue
1
in vitro differentiated cells
1
primary cell
Organ
248
brain
215
pancreas
206
heart
191
liver
170
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
91
connective tissue
90
adipose tissue
77
musculature of body
69
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
29
hg19
27
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
August, 2021
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
1
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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