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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
total RNA-seq
7
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
Assay category
424
Transcription
Target of assay
3
control
Date released
386
February, 2021
23
July, 2019
14
February, 2020
3
March, 2020
1
October, 2019
Available data
685
bam
647
bigWig
427
tsv
216
bed narrowPeak
137
bigBed narrowPeak
126
tagAlign
65
fastq
50
bed broadPeak
41
bed bed3+
40
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
Organism
427
Homo sapiens
Biosample type
422
tissue
5
primary cell
Organ
478
connective tissue
416
pancreas
401
adipose tissue
165
liver
156
epithelium
76
heart
62
blood vessel
62
vasculature
58
bone element
56
artery
26
brain
24
kidney
9
musculature of body
7
limb
6
embryo
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
427
AMP
Genome assembly (visualization)
410
GRCh38
410
hg19
Lab
427
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
August, 2021
BIOSAMPLE
ASSAY
427 results
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total RNA-seq
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
adipose tissue
381
1
subcutaneous adipose tissue
7
1
omental fat pad
5
1
frontal cortex
2
1
visceral abdominal adipose tissue
3
+ See 15 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
Purkinje cell
1
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