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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
12
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
Assay category
73
DNA binding
15
Transcription
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
56
bam
44
fastq
39
bigWig
15
tsv
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
104
Homo sapiens
Biosample type
101
tissue
2
primary cell
1
in vitro differentiated cells
Organ
910
pancreas
753
liver
486
epithelium
286
brain
224
connective tissue
216
kidney
195
heart
164
vasculature
158
blood vessel
116
limb
104
adipose tissue
96
musculature of body
73
artery
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
40
hg19
38
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
August, 2021
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
5
1
1
2
subcutaneous adipose tissue
12
5
1
1
white adipose tissue
12
adipose tissue
2
1
3
3
1
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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