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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
12
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
53
DNA binding
15
Transcription
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
37
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
56
bam
44
fastq
39
bigWig
15
tsv
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
4
tagAlign
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
84
Homo sapiens
Biosample type
82
tissue
2
primary cell
1
in vitro differentiated cells
Organ
836
pancreas
746
liver
448
epithelium
331
kidney
250
heart
216
brain
185
connective tissue
125
vasculature
119
blood vessel
85
adipose tissue
82
limb
76
musculature of body
69
blood
69
bodily fluid
61
artery
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
13
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
40
hg19
38
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
omental fat pad
11
5
1
1
2
subcutaneous adipose tissue
12
5
1
1
1
subcutaneous abdominal adipose tissue
16
3
white adipose tissue
12
adipose tissue
2
1
3
3
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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