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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
73
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
Available data
439
bam
421
bigWig
400
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
483
Homo sapiens
Biosample type
481
tissue
2
primary cell
1
in vitro differentiated cells
Organ
784
pancreas
765
liver
657
connective tissue
484
adipose tissue
417
epithelium
299
heart
280
brain
277
kidney
186
vasculature
180
blood vessel
147
bone element
114
limb
96
artery
90
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
23
spleen
21
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
spinal cord
1
thymus
Project
484
AMP
Genome assembly (visualization)
421
GRCh38
420
hg19
Lab
484
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
March, 2020
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
484 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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