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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
68
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
68
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
56
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
Available data
434
bam
416
bigWig
400
tsv
37
fastq
8
tagAlign
6
bed bed3+
4
bed narrowPeak
3
bed broadPeak
3
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
478
Homo sapiens
Biosample type
476
tissue
2
primary cell
1
in vitro differentiated cells
Organ
775
pancreas
707
liver
647
connective tissue
479
adipose tissue
409
epithelium
328
heart
277
brain
274
kidney
181
vasculature
176
blood vessel
147
bone element
114
limb
95
artery
90
musculature of body
58
blood
58
bodily fluid
42
nerve
37
embryo
32
eye
23
spleen
21
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
spinal cord
1
thymus
Project
479
AMP
Genome assembly (visualization)
416
GRCh38
415
hg19
Lab
479
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
March, 2020
assay_title!
ATAC-seq
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
479 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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