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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
61
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
61
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
44
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
Available data
438
bam
419
bigWig
400
tsv
41
fastq
7
bed narrowPeak
7
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
471
Homo sapiens
Biosample type
469
tissue
2
primary cell
1
in vitro differentiated cells
Organ
714
pancreas
705
liver
624
connective tissue
472
adipose tissue
369
epithelium
299
heart
262
kidney
163
brain
160
vasculature
155
blood vessel
147
bone element
99
limb
90
artery
77
musculature of body
67
blood
67
bodily fluid
34
nerve
30
eye
29
embryo
21
spleen
19
lung
18
ureter
15
vein
4
skeleton
2
pericardium
1
bone marrow
1
spinal cord
1
thymus
Project
472
AMP
Genome assembly (visualization)
420
GRCh38
418
hg19
Lab
472
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
March, 2020
assay_title!
ATAC-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
472 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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