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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
2
ATAC-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
54
DNA binding
4
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
March, 2020
1
May, 2023
1
November, 2019
Available data
442
bam
bigWig
398
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
62
Homo sapiens
Biosample type
62
tissue
1
in vitro differentiated cells
Organ
318
pancreas
222
epithelium
221
kidney
166
liver
161
heart
110
connective tissue
101
bone element
75
vasculature
74
blood vessel
63
adipose tissue
54
artery
54
eye
50
brain
28
limb
23
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
8
embryo
8
spleen
6
vein
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
63
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
March, 2020
February, 2020
files.file_type!
bigWig
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
WGBS
ATAC-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
omental fat pad
8
adipose tissue
1
1
1
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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