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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
54
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
March, 2020
1
May, 2023
1
November, 2019
Available data
442
bam
bigWig
400
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
64
Homo sapiens
Biosample type
64
tissue
1
in vitro differentiated cells
Organ
319
pancreas
222
epithelium
221
kidney
167
liver
164
heart
112
connective tissue
101
bone element
vasculature
77
blood vessel
65
adipose tissue
62
brain
56
artery
55
eye
31
limb
25
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
6
vein
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
65
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
March, 2020
files.file_type!
bigWig
organ_slims!
vasculature
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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