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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
23
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
23
DNA binding
7
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
398
tsv
26
fastq
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
430
Homo sapiens
Biosample type
428
tissue
2
primary cell
1
in vitro differentiated cells
Organ
743
pancreas
733
liver
555
connective tissue
489
epithelium
431
adipose tissue
383
heart
352
kidney
272
brain
229
vasculature
223
blood vessel
159
bone element
139
artery
119
limb
69
blood
69
bodily fluid
63
musculature of body
60
eye
42
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
431
AMP
Genome assembly (visualization)
411
hg19
408
GRCh38
Lab
431
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
March, 2020
August, 2017
February, 2020
BIOSAMPLE
ASSAY
431 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
1
2
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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