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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
18
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
18
DNA binding
7
DNA accessibility
Target of assay
18
control
5
RNA binding protein
transcription factor
Date released
386
February, 2021
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
420
bam
403
bigWig
400
tsv
21
fastq
5
bed narrowPeak
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
427
Homo sapiens
Biosample type
425
tissue
2
primary cell
1
in vitro differentiated cells
Organ
732
pancreas
551
connective tissue
480
epithelium
428
adipose tissue
400
liver
369
heart
342
kidney
281
brain
223
vasculature
218
blood vessel
159
bone element
136
artery
122
limb
65
musculature of body
60
eye
43
nerve
34
embryo
21
vein
19
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
428
AMP
Genome assembly (visualization)
406
hg19
403
GRCh38
Lab
428
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
March, 2020
August, 2017
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
428 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
2
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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