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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
78
ChIP-seq
34
ATAC-seq
6
DNase-seq
WGBS
5
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
78
DNA binding
40
DNA accessibility
1
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
51
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
8
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
447
bam
429
bigWig
405
tsv
46
bed narrowPeak
41
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
544
Homo sapiens
Biosample type
537
tissue
7
primary cell
1
in vitro differentiated cells
Organ
881
pancreas
783
liver
676
connective tissue
484
adipose tissue
471
epithelium
378
heart
352
kidney
284
brain
230
vasculature
224
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
22
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
545
AMP
Genome assembly (visualization)
460
hg19
428
GRCh38
Lab
545
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
March, 2020
assay_title!
WGBS
BIOSAMPLE
ASSAY
545 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
retina
3
15
3
+ See 5 more…
primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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