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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
78
ChIP-seq
34
ATAC-seq
6
DNase-seq
6
WGBS
5
pCHi-C
3
small RNA-seq
1
RRBS
Assay category
420
Transcription
78
DNA binding
40
DNA accessibility
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
8
June, 2019
3
February, 2020
1
August, 2018
August, 2021
1
January, 2018
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
449
bam
431
bigWig
405
tsv
46
bed narrowPeak
44
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
550
Homo sapiens
Biosample type
542
tissue
7
primary cell
1
in vitro differentiated cells
Organ
928
pancreas
753
liver
677
connective tissue
512
epithelium
489
adipose tissue
294
heart
284
brain
226
vasculature
222
kidney
220
blood vessel
159
bone element
139
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
550
AMP
Genome assembly (visualization)
460
hg19
430
GRCh38
Lab
550
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
March, 2020
August, 2021
BIOSAMPLE
ASSAY
550 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
14
2
1
4
retina
3
15
3
subcutaneous adipose tissue
7
12
1
1
+ See 5 more…
primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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