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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
50
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
50
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
386
February, 2021
56
August, 2017
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
414
bam
414
bigWig
401
tsv
18
fastq
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
459
Homo sapiens
Biosample type
457
tissue
2
primary cell
1
in vitro differentiated cells
Organ
762
liver
720
pancreas
627
connective tissue
460
adipose tissue
399
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
460
AMP
Genome assembly (visualization)
414
GRCh38
413
hg19
Lab
460
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
October, 2018
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
460 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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