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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
50
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
50
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
386
February, 2021
56
August, 2017
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
416
bam
416
bigWig
401
tsv
19
fastq
8
tagAlign
6
bed bed3+
4
bed narrowPeak
3
bed broadPeak
3
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
461
Homo sapiens
Biosample type
459
tissue
2
primary cell
1
in vitro differentiated cells
Organ
768
liver
741
pancreas
636
connective tissue
462
adipose tissue
419
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
462
AMP
Genome assembly (visualization)
416
GRCh38
415
hg19
Lab
462
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
October, 2018
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
462 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
2
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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