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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
50
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
50
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
386
February, 2021
57
August, 2017
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
October, 2019
Available data
419
bam
419
bigWig
401
tsv
21
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
4
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
466
Homo sapiens
Biosample type
464
tissue
2
primary cell
1
in vitro differentiated cells
Organ
875
pancreas
784
liver
657
connective tissue
487
epithelium
467
adipose tissue
345
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
467
AMP
Genome assembly (visualization)
420
hg19
419
GRCh38
Lab
467
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2019
October, 2018
BIOSAMPLE
ASSAY
467 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
2
1
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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