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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
116
ChIP-seq
36
DNase-seq
13
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
407
Transcription
116
DNA binding
49
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
63
histone
63
histone modification
40
broad histone mark
36
control
23
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
57
August, 2017
44
October, 2019
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
4
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
530
bam
495
bigWig
407
tsv
84
bed narrowPeak
74
bigBed narrowPeak
44
fastq
40
bed bed3+
37
bed broadPeak
36
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
585
Homo sapiens
Biosample type
583
tissue
2
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
586
AMP
Genome assembly (visualization)
501
hg19
499
GRCh38
Lab
586
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
blood vessel
intestine
BIOSAMPLE
ASSAY
586 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
muscle of leg
7
13
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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