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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
22
ChIP-seq
4
ATAC-seq
4
DNase-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
22
DNA binding
8
DNA accessibility
2
DNA methylation
Target of assay
18
transcription factor
6
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
1
control
Date released
386
February, 2021
17
August, 2017
12
July, 2019
5
October, 2018
3
June, 2019
3
November, 2017
1
January, 2018
1
November, 2018
1
October, 2017
1
October, 2019
Available data
447
bam
430
bigWig
401
tsv
47
fastq
17
bed narrowPeak
14
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
430
Homo sapiens
Biosample type
423
tissue
7
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
430
AMP
Genome assembly (visualization)
428
hg19
426
GRCh38
Lab
430
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
430 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
choroid plexus epithelial cell
3
1
mesenchymal stem cell of adipose
1
1
smooth muscle cell of the brain vasculature
1
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