Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
41
ChIP-seq
18
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
Assay category
463
Transcription
41
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
536
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
507
bam
481
bigWig
459
tsv
88
txt
43
fastq
19
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
4
bed bed3
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
617
Homo sapiens
Biosample type
614
tissue
3
primary cell
1
in vitro differentiated cells
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
617
AMP
1
T1D
Genome assembly (visualization)
494
hg19
489
GRCh38
Lab
617
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
618 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
3
3
1
bone element
84
bone tissue
58
subcutaneous adipose tissue
7
1
12
1
1
omental fat pad
5
11
1
1
2
+ See 16 more…
primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download