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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
139
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
RNA microarray
Assay category
408
Transcription
139
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
70
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
556
bam
516
bigWig
408
tsv
105
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
612
Homo sapiens
Biosample type
609
tissue
2
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
683
connective tissue
523
epithelium
490
adipose tissue
393
heart
352
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
96
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
612
AMP
Genome assembly (visualization)
522
hg19
520
GRCh38
Lab
612
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
lymph node
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
612 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
1
muscle of leg
7
13
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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