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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
6
WGBS
2
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
36
DNA binding
6
DNA methylation
2
Transcription
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
6
control
Date released
42
August, 2017
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
Available data
7
tagAlign
5
fastq
3
bam
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
1
bedpe bed3+
Organism
46
Homo sapiens
Biosample type
46
tissue
1
in vitro differentiated cells
Organ
277
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
89
bone element
77
connective tissue
71
blood vessel
71
vasculature
48
artery
47
adipose tissue
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
hg19
419
GRCh38
Lab
47
AMP-T2D consortium
organ_slims!
lymph node
assembly!
hg19
month_released!
October, 2018
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
WGBS
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
adipose tissue
1
3
1
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
white fat cell
1
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