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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
127
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
408
Transcription
127
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
27
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
392
February, 2021
70
October, 2019
45
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
544
bam
504
bigWig
408
tsv
105
bed narrowPeak
94
bigBed narrowPeak
39
bed broadPeak
38
bed bed3+
38
bigBed broadPeak
32
fastq
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
600
Homo sapiens
Biosample type
598
tissue
2
primary cell
1
in vitro differentiated cells
Organ
892
pancreas
778
liver
667
connective tissue
503
epithelium
479
adipose tissue
393
heart
354
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
601
AMP
Genome assembly (visualization)
510
hg19
508
GRCh38
Lab
601
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
organ_slims!
lymph node
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
601 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
1
subcutaneous adipose tissue
7
12
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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