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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
61
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
45
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
43
bam
43
fastq
25
bigWig
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
77
Homo sapiens
Biosample type
77
tissue
1
in vitro differentiated cells
Organ
538
liver
394
pancreas
274
epithelium
214
kidney
187
heart
170
connective tissue
145
brain
143
vasculature
138
blood vessel
100
limb
97
bone element
78
adipose tissue
77
artery
74
musculature of body
68
blood
68
bodily fluid
39
eye
nerve
23
spleen
18
ureter
16
vein
15
embryo
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
25
hg19
24
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
nerve
assay_slims!
Transcription
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
25
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
1
3
3
1
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in vitro differentiated cells
white fat cell
1
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